PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00632.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 170aa    MW: 19373.8 Da    PI: 4.3976
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00632.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.49.2e-26686180
                      NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratks 80
                             l pGfrFhPtd elv +yLk+kv gkk+ + ++i+e+diyk+eP dLp k ++++++ +wyfF++r kky++g ++nr+t+s
  Rsa1.0_00632.1_g00007.1  6 LEPGFRFHPTDVELVRYYLKRKVLGKKFMT-NAIAELDIYKFEPPDLPeKsCLRTGDLKWYFFCPRLKKYPNGGKANRSTES 86
                             579************************988.89**************95357788889********************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-27486IPR003441NAC domain
PROSITE profilePS5100523.2876170IPR003441NAC domain
PfamPF023658.8E-13885IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MVKNSLEPGF RFHPTDVELV RYYLKRKVLG KKFMTNAIAE LDIYKFEPPD LPEKSCLRTG  60
DLKWYFFCPR LKKYPNGGKA NRSTESDDDD FYSMLDLFVV DSDESLRLDG FNNQYEVRHE  120
TGVPVVDEAP VSLEDVDMSW MQGDELFIGI EELIEPSTPP AAQAGHPGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-235841491Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382771e-118KF738277.1 Brassica napus NAC transcription factor 103 (NAC103.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013642966.16e-54PREDICTED: NAC domain-containing protein 82-like
RefseqXP_013625495.16e-54PREDICTED: NAC domain-containing protein 82
RefseqNP_001302893.16e-54NAC domain-containing protein 82-like
SwissprotQ9FY824e-40NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A078D5T27e-54A0A078D5T2_BRANA; BnaC03g50150D protein
TrEMBLA0A0D3BF797e-54A0A0D3BF79_BRAOL; Uncharacterized protein
STRINGBra024263.1-P3e-52(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79671340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-48NAC domain containing protein 103